BDC Variable Library

A LinkML-based variable library for BioData Catalyst datasets.

URI: https://w3id.org/bdc/varlib

Name: bdc_varlib

Classes

Class	Description
ConditionDisease	BDC Variable Library category: Condition/Disease
DemographicsSocioeconomic	BDC Variable Library category: Demographics/Socioeconomic
DiagnosticTestProcedure	BDC Variable Library category: Diagnostic Test/Procedure
DiseaseHistory	BDC Variable Library category: Disease History
FamilyHistory	BDC Variable Library category: Family History
LabMeasurement	BDC Variable Library category: Lab Measurement
LifestyleBehavioral	BDC Variable Library category: Lifestyle/Behavioral
MentalHealthPsychosocial	BDC Variable Library category: Mental Health/Psychosocial
MortalityOutcome	BDC Variable Library category: Mortality/Outcome
StudyAdministrativeMetadata	BDC Variable Library category: Study Administrative/Metadata
TreatmentMedication	BDC Variable Library category: Treatment/Medication
VitalSignsAnthropometry	BDC Variable Library category: Vital Signs/Anthropometry

Slots

Slot	Description
afib	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
albumin_bld	MeasurementObservation derivation of 'albumin_bld'
albumin_creatinine	MeasurementObservation derivation of 'albumin_creatinine'
albumin_urine	MeasurementObservation derivation of 'albumin_urine'
alcohol	MeasurementObservation derivation of 'alcohol'
alcohol_servings	MeasurementObservation derivation of 'alcohol_servings'
alpha1_antitrypsin	MeasurementObservation derivation of 'alpha1_antitrypsin'
alt_sgpt	MeasurementObservation derivation of 'alt_sgpt'
angina	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
apnea_hypop_index	MeasurementObservation derivation of 'apnea_hypop_index'
aspirin	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
ast_sgot	MeasurementObservation derivation of 'ast_sgot'
asthma	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
asthma_md	CLINICAL_DIAGNOSIS
basophil_ct	MeasurementObservation derivation of 'basophil_ct'
basophil_ncnc_bld	MeasurementObservation derivation of 'basophil_ncnc_bld'
bdy_hgt	MeasurementObservation derivation of 'bdy_hgt'
bdy_temp	MeasurementObservation derivation of 'bdy_temp'
bdy_wgt	MeasurementObservation derivation of 'bdy_wgt'
bilirubin_con	MeasurementObservation derivation of 'bilirubin_con'
bilirubin_tot	MeasurementObservation derivation of 'bilirubin_tot'
blood_clots	PATIENT_SELF-REPORTED_CONDITION
blood_pressure	MeasurementObservationSet/MeasurementObservation derivation of 'blood_pressur...
bmi	MeasurementObservation derivation of 'bmi'
bnp	MeasurementObservation derivation of 'bnp'
body_measures	MeasurementObservation derivation of 'body_measures'
bronchitis	PATIENT_SELF-REPORTED_CONDITION
bronchitis_md	CLINICAL_DIAGNOSIS
bun	MeasurementObservation derivation of 'bun'
cac_score	MeasurementObservation derivation of 'cac_score'
cac_volume	MeasurementObservation derivation of 'cac_volume'
carotid_imt	MeasurementObservation derivation of 'carotid_imt'
carotid_plaque	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
carotid_sten_left	MeasurementObservation derivation of 'carotid_sten_left'
carotid_sten_right	MeasurementObservation derivation of 'carotid_sten_right'
cd40	MeasurementObservation derivation of 'cd40'
cesd_score	MeasurementObservation derivation of 'cesd_score'
chd	CASE_REPORT_FORM; CLINICAL_DIAGNOSIS; PATIENT_SELF_REPORT
chf	CASE_REPORT_FORM; CLINICAL_DIAGNOSIS; PATIENT_SELF_REPORT
chloride_bld	MeasurementObservation derivation of 'chloride_bld'
chr_bronchitis	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION; PATIENT_SELF_REPORT
cig_smok	Observation derivation of 'cig_smok'
copd	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
creat_bld	MeasurementObservation derivation of 'creat_bld'
creat_urin	MeasurementObservation derivation of 'creat_urin'
crp	MeasurementObservation derivation of 'crp'
cvd	CLINICAL_DIAGNOSIS
cysc_bld	MeasurementObservation derivation of 'cysc_bld'
d_dimer	MeasurementObservation derivation of 'd_dimer'
demography	Demography derivation of 'demography'
diabetes	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
edu_lvl	SdohObservation/Observation derivation of 'edu_lvl'
egfr	MeasurementObservation derivation of 'egfr'
emphysema	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION; PATIENT_SELF_REPORT
eosinophil_ct	MeasurementObservation derivation of 'eosinophil_ct'
eosinophil_ncnc_bld	MeasurementObservation derivation of 'eosinophil_ncnc_bld'
eselectin	MeasurementObservation derivation of 'eselectin'
factor_7	MeasurementObservation derivation of 'factor_7'
factor_8	MeasurementObservation derivation of 'factor_8'
fam_income	Observation/SdohObservation derivation of 'fam_income'
fam_stroke	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
fast_gluc_bld	MeasurementObservation derivation of 'fast_gluc_bld'
fasting_blood_gluc	MeasurementObservation derivation of 'fasting_blood_gluc'
ferritin	MeasurementObservation derivation of 'ferritin'
fibrin	MeasurementObservation derivation of 'fibrin'
fruit_serving	MeasurementObservation derivation of 'fruit_serving'
glucose_bld	MeasurementObservation derivation of 'glucose_bld'
hdl	MeasurementObservation derivation of 'hdl'
hemat	MeasurementObservation derivation of 'hemat'
hemo	MeasurementObservation derivation of 'hemo'
hemo_a1c	MeasurementObservation derivation of 'hemo_a1c'
hip_circ	MeasurementObservation derivation of 'hip_circ'
hist_cor_angio	PATIENT_SELF-REPORTED_CONDITION
hist_cor_art_dis	PATIENT_SELF-REPORTED_CONDITION
hist_cor_bypg	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
hist_coronary_bypass	PATIENT_SELF-REPORTED_CONDITION
hist_cvd	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION; PATIENT_SELF_REPORT
hist_heart_disease	PATIENT_SELF-REPORTED_CONDITION
hist_heart_failure	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
hist_hrt_failure	PATIENT_SELF-REPORTED_CONDITION
hist_hrtdis	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
hist_hrtfail	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
hist_mi	PATIENT_SELF-REPORTED_CONDITION
hist_my_inf	CLINICAL_DIAGNOSIS; EHR_ENCOUNTER_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION;...
history_cvd	CLINICAL_DIAGNOSIS
hrt_rt	MeasurementObservation derivation of 'hrt_rt'
hrtrt	MeasurementObservation derivation of 'hrtrt'
hypert_trt	CLINICAL_DIAGNOSIS; PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF-REPORTED_C...
hyperten	CASE_REPORT_FORM; CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
hypertension	CLINICAL_DIAGNOSIS; SELF_DIAGNOSIS
icam	MeasurementObservation derivation of 'icam'
il10	MeasurementObservation derivation of 'il10'
il18	MeasurementObservation derivation of 'il18'
il6	MeasurementObservation derivation of 'il6'
insulin_blood	MeasurementObservation derivation of 'insulin_blood'
insulin_in_blood	MeasurementObservation derivation of 'insulin_in_blood'
isoprostane_8_epi_pgf2a	MeasurementObservation derivation of 'isoprostane_8_epi_pgf2a'
labs_cbc	MeasurementObservation derivation of 'labs_cbc'
lactate	MeasurementObservation derivation of 'lactate'
lactate_dehyd	MeasurementObservation derivation of 'lactate_dehyd'
ldl	MeasurementObservation derivation of 'ldl'
lppla2_act	MeasurementObservation derivation of 'lppla2_act'
lppla2_mass	MeasurementObservation derivation of 'lppla2_mass'
lvh_ekg	CLINICAL_DIAGNOSIS; CLINICAL_FINDING; PATIENT_SELF-REPORTED_CONDITION
lympho_ct	MeasurementObservation derivation of 'lympho_ct'
lympho_pct	MeasurementObservation derivation of 'lympho_pct'
lymphocyte_ct	MeasurementObservation derivation of 'lymphocyte_ct'
mch	MeasurementObservation derivation of 'mch'
mchc	MeasurementObservation derivation of 'mchc'
mcv	MeasurementObservation derivation of 'mcv'
mean_art_press	MeasurementObservation derivation of 'mean_art_press'
med_use	PATIENT SELF-REPORTED MEDICATION
mmp9	MeasurementObservation derivation of 'mmp9'
mn_art_pres	MeasurementObservation derivation of 'mn_art_pres'
monocyte_ct	MeasurementObservation derivation of 'monocyte_ct'
monocyte_ncnc_bld	MeasurementObservation derivation of 'monocyte_ncnc_bld'
neutro_ct	MeasurementObservation derivation of 'neutro_ct'
neutro_pct	MeasurementObservation derivation of 'neutro_pct'
neutrophil_ct	MeasurementObservation derivation of 'neutrophil_ct'
nt_bnp	MeasurementObservation derivation of 'nt_bnp'
obesity	CASE_REPORT_FORM; CLINICAL_DIAGNOSIS
pacem_stat	MeasurementObservation/Procedure derivation of 'pacem_stat'
pad	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION; SELF_REPORTED
participant	Participant derivation of 'participant'
person	Person derivation of 'person'
platelet_ct	MeasurementObservation derivation of 'platelet_ct'
pmv	MeasurementObservation derivation of 'pmv'
potassium	MeasurementObservation derivation of 'potassium'
pr_ekg	MeasurementObservation derivation of 'pr_ekg'
pr_qrs_qt	MeasurementObservation derivation of 'pr_qrs_qt'
pselectin	MeasurementObservation derivation of 'pselectin'
pulmonary_fibrosis	CLINICAL_DIAGNOSIS
qrs_ekg	MeasurementObservation derivation of 'qrs_ekg'
qt_ekg	MeasurementObservation derivation of 'qt_ekg'
rbc	MeasurementObservation derivation of 'rbc'
rdbld_ct	MeasurementObservation derivation of 'rdbld_ct'
rdw	MeasurementObservation derivation of 'rdw'
research_study	ResearchStudy derivation of 'research_study'
researchstudy	ResearchStudy derivation of 'researchstudy'
sleep_duration_daily	MeasurementObservation derivation of 'sleep_duration_daily'
slp_ap	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION; PATIENT_SELF_REPORT
sodium_blood	MeasurementObservation derivation of 'sodium_blood'
sodium_intak	MeasurementObservation derivation of 'sodium_intak'
spirometry	MeasurementObservationSet derivation of 'spirometry'
spirometry_post_bd	MeasurementObservationSet derivation of 'spirometry_post_bd'
spirometry_pre_bd	MeasurementObservationSet derivation of 'spirometry_pre_bd'
spo2	MeasurementObservation derivation of 'spo2'
stroke	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
stroke_isch_atk	PATIENT_SELF-REPORTED_CONDITION
tak_aceinhib	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_adrenergics	PATIENT SELF-REPORTED MEDICATION
tak_aldorecepblk	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_alphablk	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_angiorecepblk	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_antihypertensives	PATIENT SELF-REPORTED MEDICATION
tak_betablk	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_calchanblk	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION; PRESCRIPT...
tak_cenactag	PATIENT SELF-REPORTED MEDICATION
tak_cort_steroid_oral	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_cort_steroid_resp	PATIENT SELF-REPORTED MEDICATION
tak_diuret	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION; PRESCRIPT...
tak_insulin	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_med_diab	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_nstat_med	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_orlhypoag	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_statin	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_steroid	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
tak_vasodil	PATIENT SELF-REPORTED MEDICATION; PATIENT_SELF_REPORTED_MEDICATION
taking_non_statin_medication	PATIENT_SELF_REPORTED_MEDICATION
tnfa	MeasurementObservation derivation of 'tnfa'
tnfa_r1	MeasurementObservation derivation of 'tnfa_r1'
tot_chol_bld	MeasurementObservation derivation of 'tot_chol_bld'
triglyc_bld	MeasurementObservation derivation of 'triglyc_bld'
troponin	MeasurementObservation derivation of 'troponin'
valv_hrtdis	CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION; PATIENT_SELF_REPORT
vege_serving	MeasurementObservation derivation of 'vege_serving'
ven_thromb	CLINICAL_DIAGNOSIS; OMOP:4822126; OMOP:4822160; PATIENT_SELF-REPORTED_CONDITI...
visit	Visit derivation of 'visit'
waist_circ	MeasurementObservation derivation of 'waist_circ'
waist_hip	MeasurementObservation derivation of 'waist_hip'
whtbld_ct	MeasurementObservation derivation of 'whtbld_ct'
willeb_fac	MeasurementObservation derivation of 'willeb_fac'

Enumerations

Enumeration	Description
ChfEnum	Coded values observed for 'chf' across all contributing studies
CigSmokEnum	Coded values observed for 'cig_smok' across all contributing studies
ConditionStatusEnum	The status vocabulary real value_mappings target consistently across the repo...
DemographyEnum	Coded values observed for 'demography' across all contributing studies
EduLvlEnum	Coded values observed for 'edu_lvl' across all contributing studies
HistCorAngioEnum	Coded values observed for 'hist_cor_angio' across all contributing studies
HypertTrtEnum	Coded values observed for 'hypert_trt' across all contributing studies
LvhEkgEnum	Coded values observed for 'lvh_ekg' across all contributing studies
MedUseEnum	Coded values observed for 'med_use' across all contributing studies
TakBetablkEnum	Coded values observed for 'tak_betablk' across all contributing studies

Types

Type	Description
Boolean	A binary (true or false) value
Curie	a compact URI
Date	a date (year, month and day) in an idealized calendar
DateOrDatetime	Either a date or a datetime
Datetime	The combination of a date and time
Decimal	A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double	A real number that conforms to the xsd:double specification
Float	A real number that conforms to the xsd:float specification
Integer	An integer
Jsonpath	A string encoding a JSON Path
Jsonpointer	A string encoding a JSON Pointer
Ncname	Prefix part of CURIE
Nodeidentifier	A URI, CURIE or BNODE that represents a node in a model
Objectidentifier	A URI or CURIE that represents an object in the model
Sparqlpath	A string encoding a SPARQL Property Path
String	A character string
Time	A time object represents a (local) time of day, independent of any particular...
Uri	a complete URI
Uriorcurie	a URI or a CURIE

Subsets

Subset	Description