Class: DiagnosticTestProcedure
BDC Variable Library category: Diagnostic Test/Procedure
URI: bdcvl:DiagnosticTestProcedure
classDiagram
class DiagnosticTestProcedure
click DiagnosticTestProcedure href "../DiagnosticTestProcedure/"
DiagnosticTestProcedure : apnea_hypop_index
DiagnosticTestProcedure : cac_score
DiagnosticTestProcedure : cac_volume
DiagnosticTestProcedure : carotid_imt
DiagnosticTestProcedure : carotid_plaque
DiagnosticTestProcedure --> "0..1" ConditionStatusEnum : carotid_plaque
click ConditionStatusEnum href "../ConditionStatusEnum/"
DiagnosticTestProcedure : carotid_sten_left
DiagnosticTestProcedure : carotid_sten_right
DiagnosticTestProcedure : lvh_ekg
DiagnosticTestProcedure --> "0..1" LvhEkgEnum : lvh_ekg
click LvhEkgEnum href "../LvhEkgEnum/"
DiagnosticTestProcedure : pacem_stat
DiagnosticTestProcedure --> "0..1" ConditionStatusEnum : pacem_stat
click ConditionStatusEnum href "../ConditionStatusEnum/"
DiagnosticTestProcedure : pr_ekg
DiagnosticTestProcedure : pr_qrs_qt
DiagnosticTestProcedure : qrs_ekg
DiagnosticTestProcedure : qt_ekg
DiagnosticTestProcedure : spirometry
DiagnosticTestProcedure : spirometry_post_bd
DiagnosticTestProcedure : spirometry_pre_bd
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| apnea_hypop_index | 0..1 String |
MeasurementObservation derivation of 'apnea_hypop_index' | direct |
| cac_score | 0..1 String |
MeasurementObservation derivation of 'cac_score' | direct |
| cac_volume | 0..1 String |
MeasurementObservation derivation of 'cac_volume' | direct |
| carotid_imt | 0..1 String |
MeasurementObservation derivation of 'carotid_imt' | direct |
| carotid_plaque | 0..1 ConditionStatusEnum |
CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION | direct |
| carotid_sten_left | 0..1 String |
MeasurementObservation derivation of 'carotid_sten_left' | direct |
| carotid_sten_right | 0..1 String |
MeasurementObservation derivation of 'carotid_sten_right' | direct |
| lvh_ekg | 0..1 LvhEkgEnum |
CLINICAL_DIAGNOSIS; CLINICAL_FINDING; PATIENT_SELF-REPORTED_CONDITION | direct |
| pacem_stat | 0..1 ConditionStatusEnum |
MeasurementObservation/Procedure derivation of 'pacem_stat' | direct |
| pr_ekg | 0..1 String |
MeasurementObservation derivation of 'pr_ekg' | direct |
| pr_qrs_qt | 0..1 String |
MeasurementObservation derivation of 'pr_qrs_qt' | direct |
| qrs_ekg | 0..1 String |
MeasurementObservation derivation of 'qrs_ekg' | direct |
| qt_ekg | 0..1 String |
MeasurementObservation derivation of 'qt_ekg' | direct |
| spirometry | 0..1 String |
MeasurementObservationSet derivation of 'spirometry' | direct |
| spirometry_post_bd | 0..1 String |
MeasurementObservationSet derivation of 'spirometry_post_bd' | direct |
| spirometry_pre_bd | 0..1 String |
MeasurementObservationSet derivation of 'spirometry_pre_bd' | direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/bdc/varlib
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | bdcvl:DiagnosticTestProcedure |
| native | bdcvl:DiagnosticTestProcedure |
LinkML Source
Direct
name: DiagnosticTestProcedure
description: 'BDC Variable Library category: Diagnostic Test/Procedure'
from_schema: https://w3id.org/bdc/varlib
slots:
- apnea_hypop_index
- cac_score
- cac_volume
- carotid_imt
- carotid_plaque
- carotid_sten_left
- carotid_sten_right
- lvh_ekg
- pacem_stat
- pr_ekg
- pr_qrs_qt
- qrs_ekg
- qt_ekg
- spirometry
- spirometry_post_bd
- spirometry_pre_bd
Induced
name: DiagnosticTestProcedure
description: 'BDC Variable Library category: Diagnostic Test/Procedure'
from_schema: https://w3id.org/bdc/varlib
attributes:
apnea_hypop_index:
name: apnea_hypop_index
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: CHS, FHS, HCHS
dataset_accession:
tag: dataset_accession
value: pht003699, pht003700, pht000395, pht000397, pht004715
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: CHS-ingest/apnea_hypop_index.yaml, FHS-ingest/apnea_hypop_index.yaml,
HCHS-ingest/apnea_hypop_index.yaml
description: MeasurementObservation derivation of 'apnea_hypop_index'
title: apnea_hypop_index
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:37396400
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
cac_score:
name: cac_score
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: CARDIA, CHS, FHS, JHS, MESA
dataset_accession:
tag: dataset_accession
value: pht003298, pht001754, pht001854, pht001459, pht000144, pht000145, pht000147,
pht005161, pht001948, pht001111, pht001116, pht001118, pht001119, pht001120,
pht001121, pht001204, pht001205, pht003086, pht003091
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: CARDIA-ingest/cac_score.yaml, CHS-ingest/cac_score.yaml, FHS-ingest/cac_score.yaml,
JHS-ingest/cac_score.yaml, MESA-ingest/cac_score.yaml
description: MeasurementObservation derivation of 'cac_score'
title: cac_score
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:42872742
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
cac_volume:
name: cac_volume
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: FHS, MESA
dataset_accession:
tag: dataset_accession
value: pht005161, pht001111, pht001116, pht001118, pht001119, pht001120, pht001121,
pht001204, pht001205, pht003086, pht003091
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: FHS-ingest/cac_volume.yaml, MESA-ingest/cac_volume.yaml
description: MeasurementObservation derivation of 'cac_volume'
title: cac_volume
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4166120
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
carotid_imt:
name: carotid_imt
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: ARIC, CHS, FHS, JHS, MESA
dataset_accession:
tag: dataset_accession
value: pht004207, pht004213, pht004223, pht012850, pht001468, pht001473, pht000083,
pht000907, pht008791, pht003086, pht001116
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: ARIC-ingest/carotid_imt.yaml, CHS-ingest/carotid_imt.yaml, FHS-ingest/carotid_imt.yaml,
JHS-ingest/carotid_imt.yaml, MESA-ingest/carotid_imt.yaml
description: MeasurementObservation derivation of 'carotid_imt'
title: carotid_imt
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4138462
- OBA:2050108
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
carotid_plaque:
name: carotid_plaque
annotations:
bdchm_class:
tag: bdchm_class
value: Condition
source_study:
tag: source_study
value: ARIC, CARDIA, MESA, WHI
dataset_accession:
tag: dataset_accession
value: pht004063, pht004064, pht012813, pht001754, pht001116, pht003086, pht003091,
pht003407, pht003414, pht006223
variable_accession:
tag: variable_accession
value: phv00204712, phv00204776, phv00204777, phv00204778, phv00204779, phv00204780,
phv00204781, phv00204782, phv00204783, phv00204784, phv00204787, phv00204788,
phv00204789, phv00204790, phv00204791, phv00204792, phv00204881, phv00204882,
phv00204883, phv00204884, phv00204885, phv00204886, phv00204887, phv00204888,
phv00204889, phv00204890, phv00204891, phv00204892, phv00204893, phv00204894,
phv00204895, phv00512002, phv00512003, phv00512004, phv00512006, phv00512008,
phv00512009, phv00512010, phv00512014, phv00512015, phv00512016, phv00084797,
phv00084802, phv00175613, phv00177047, phv00193160, phv00193715, phv00193717,
phv00283698
source_file:
tag: source_file
value: ARIC-ingest/carotid_plaque.yaml, CARDIA-ingest/carotid_plaque.yaml,
MESA-ingest/carotid_plaque.yaml, WHI-ingest/carotid_plaque.yaml
description: CLINICAL_DIAGNOSIS; PATIENT_SELF-REPORTED_CONDITION
title: carotid_plaque
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4102124
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: ConditionStatusEnum
carotid_sten_left:
name: carotid_sten_left
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: ARIC, CHS, FHS, MESA
dataset_accession:
tag: dataset_accession
value: pht004061, pht001473, pht000083, pht001116
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: ARIC-ingest/carotid_sten_left.yaml, CHS-ingest/carotid_sten_left.yaml,
FHS-ingest/carotid_sten_left.yaml, MESA-ingest/carotid_sten_left.yaml
description: MeasurementObservation derivation of 'carotid_sten_left'
title: carotid_sten_left
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:43020498
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
carotid_sten_right:
name: carotid_sten_right
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: ARIC, CHS, FHS, MESA
dataset_accession:
tag: dataset_accession
value: pht004061, pht001473, pht000083, pht001116
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: ARIC-ingest/carotid_sten_right.yaml, CHS-ingest/carotid_sten_right.yaml,
FHS-ingest/carotid_sten_right.yaml, MESA-ingest/carotid_sten_right.yaml
description: MeasurementObservation derivation of 'carotid_sten_right'
title: carotid_sten_right
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:43021859
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
lvh_ekg:
name: lvh_ekg
annotations:
bdchm_class:
tag: bdchm_class
value: Condition
source_study:
tag: source_study
value: CHS, FHS, HCHS, JHS, MESA, WHI
dataset_accession:
tag: dataset_accession
value: pht001451, pht001452, pht001474, pht001475, pht001488, pht001489, pht001490,
pht001491, pht001492, pht001493, pht001494, pht001495, pht003094, pht004815,
pht005140, pht005141, pht005142, pht006007, pht006008, pht000012, pht000013,
pht000014, pht000015, pht000016, pht000017, pht000018, pht000020, pht000021,
pht000022, pht000023, pht000024, pht000025, pht000026, pht000027, pht000692,
pht000009, pht000010, pht000011, pht000030, pht000031, pht000032, pht000033,
pht000034, pht000036, pht000747, pht000074, pht006026, pht009761, pht007777,
pht004715, pht008729, pht001111, pht001116, pht003086, pht003091, pht002118,
pht006223
variable_accession:
tag: variable_accession
value: phv00100067, phv00100455, phv00101981, phv00102606, phv00104338, phv00104992,
phv00106359, phv00107298, phv00108174, phv00108796, phv00109326, phv00109874,
phv00177496, phv00251491, phv00254240, phv00254748, phv00255139, phv00274864,
phv00275222, phv00001407, phv00001425, phv00001528, phv00001719, phv00001740,
phv00001757, phv00001996, phv00002176, phv00002371, phv00002402, phv00002611,
phv00002640, phv00002817, phv00003616, phv00004042, phv00004466, phv00004896,
phv00004903, phv00005265, phv00005892, phv00006249, phv00006643, phv00070539,
phv00000505, phv00000555, phv00000567, phv00000650, phv00000663, phv00000725,
phv00000735, phv00000803, phv00000818, phv00000853, phv00000884, phv00000902,
phv00000908, phv00000912, phv00000937, phv00001009, phv00001024, phv00001025,
phv00001026, phv00001065, phv00001073, phv00001172, phv00001212, phv00001230,
phv00001333, phv00007666, phv00007907, phv00007913, phv00008017, phv00008367,
phv00008674, phv00009070, phv00009523, phv00010470, phv00072295, phv00021186,
phv00277036, phv00277037, phv00423906, phv00423907, phv00423908, phv00369890,
phv00369891, phv00369892, phv00369893, phv00369894, phv00369895, phv00369896,
phv00369897, phv00369898, phv00369899, phv00369900, phv00369901, phv00369902,
phv00526416, phv00401172, phv00082842, phv00084552, phv00174569, phv00175080,
phv00175124, phv00218150, phv00176503, phv00176547, phv00155172, phv00283580
source_file:
tag: source_file
value: CHS-ingest/lvh_ekg.yaml, FHS-ingest/lvh_ekg.yaml, HCHS-ingest/lvh_ekg.yaml,
JHS-ingest/lvh_ekg.yaml, MESA-ingest/lvh_ekg.yaml, WHI-ingest/lvh_ekg.yaml
description: CLINICAL_DIAGNOSIS; CLINICAL_FINDING; PATIENT_SELF-REPORTED_CONDITION
title: lvh_ekg
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- HP:0001712
- HP:0001714
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: LvhEkgEnum
pacem_stat:
name: pacem_stat
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation, Procedure
source_study:
tag: source_study
value: ARIC, HCHS, MESA, WHI
dataset_accession:
tag: dataset_accession
value: pht004067, pht004102, pht004128, pht004715, pht001111, pht001121, pht003086,
pht003091, pht002118, pht006223
variable_accession:
tag: variable_accession
value: phv00205047, phv00206911, phv00207815, phv00082702, phv00087149, phv00174642,
phv00176065
source_file:
tag: source_file
value: ARIC-ingest/pacem_stat.yaml, HCHS-ingest/pacem_stat.yaml, MESA-ingest/pacem_stat.yaml,
WHI-ingest/pacem_stat.yaml
description: MeasurementObservation/Procedure derivation of 'pacem_stat'
title: pacem_stat
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:45772840
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: ConditionStatusEnum
pr_ekg:
name: pr_ekg
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: ARIC, HCHS, JHS, MESA, WHI
dataset_accession:
tag: dataset_accession
value: pht004231, pht004234, pht006436, pht004232, pht004233, pht004715, pht008747,
pht008746, pht001111, pht001116, pht003086, pht003091, pht002118
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: ARIC-ingest/pr_ekg.yaml, HCHS-ingest/pr_ekg.yaml, JHS-ingest/pr_ekg.yaml,
MESA-ingest/pr_ekg.yaml, WHI-ingest/pr_ekg.yaml
description: MeasurementObservation derivation of 'pr_ekg'
title: pr_ekg
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4274406
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
pr_qrs_qt:
name: pr_qrs_qt
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: FHS
dataset_accession:
tag: dataset_accession
value: pht000299
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: FHS-ingest/pr_qrs_qt.yaml
description: MeasurementObservation derivation of 'pr_qrs_qt'
title: pr_qrs_qt
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4273023
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
qrs_ekg:
name: qrs_ekg
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: ARIC, CHS, FHS, HCHS, JHS, MESA, WHI
dataset_accession:
tag: dataset_accession
value: pht004231, pht004077, pht012823, pht004072, pht006436, pht012821, pht004073,
pht004074, pht004232, pht012824, pht004233, pht004071, pht004078, pht004234,
pht012822, pht004075, pht004076, pht001451, pht001452, pht001474, pht001475,
pht001488, pht001489, pht001490, pht001491, pht001492, pht001493, pht001494,
pht001495, pht003094, pht006005, pht004814, pht004815, pht005140, pht005141,
pht005142, pht006007, pht006008, pht000149, pht000012, pht000013, pht000014,
pht000015, pht000016, pht000017, pht000018, pht000019, pht000020, pht000021,
pht000022, pht000023, pht000024, pht000025, pht000026, pht000027, pht000028,
pht000029, pht000692, pht000010, pht000030, pht000031, pht000032, pht000033,
pht000034, pht000035, pht000036, pht000747, pht000074, pht006018, pht004715,
pht008746, pht008729, pht008731, pht008747, pht001111, pht001116, pht003086,
pht003091, pht002118
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: ARIC-ingest/qrs_ekg.yaml, CHS-ingest/qrs_ekg.yaml, FHS-ingest/qrs_ekg.yaml,
HCHS-ingest/qrs_ekg.yaml, JHS-ingest/qrs_ekg.yaml, MESA-ingest/qrs_ekg.yaml,
WHI-ingest/qrs_ekg.yaml
description: MeasurementObservation derivation of 'qrs_ekg'
title: qrs_ekg
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OBA:1001086
- OMOP:4273021
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
qt_ekg:
name: qt_ekg
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservation
source_study:
tag: source_study
value: ARIC, FHS, HCHS, JHS, MESA, WHI
dataset_accession:
tag: dataset_accession
value: pht004231, pht004234, pht004232, pht006436, pht004233, pht004080, pht000149,
pht000014, pht000015, pht000016, pht000017, pht000019, pht000020, pht000030,
pht000031, pht000032, pht004715, pht008729, pht008731, pht008746, pht008747,
pht001111, pht001116, pht003086, pht003091, pht002118
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: ARIC-ingest/qt_ekg.yaml, FHS-ingest/qt_ekg.yaml, HCHS-ingest/qt_ekg.yaml,
JHS-ingest/qt_ekg.yaml, MESA-ingest/qt_ekg.yaml, WHI-ingest/qt_ekg.yaml
description: MeasurementObservation derivation of 'qt_ekg'
title: qt_ekg
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4273023
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
spirometry:
name: spirometry
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservationSet
source_study:
tag: source_study
value: ARIC, CARDIA, CHS, COPDGene, FHS, HCHS, JHS, MESA
dataset_accession:
tag: dataset_accession
value: pht004142, pht012835, pht006467, pht006468, pht001575, pht001627, pht001667,
pht001781, pht001782, pht001451, pht001492, pht001495, pht002239, pht000018,
pht000019, pht000103, pht000105, pht000101, pht000104, pht000106, pht000395,
pht000832, pht000102, pht005170, pht003632, pht005169, pht004715, pht001969,
pht008729, pht001112, pht001114, pht001122
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: ARIC-ingest/spirometry.yaml, CARDIA-ingest/spirometry.yaml, CHS-ingest/spirometry.yaml,
COPDGene-ingest/spirometry.yaml, FHS-ingest/spirometry.yaml, HCHS-ingest/spirometry.yaml,
JHS-ingest/spirometry.yaml, MESA-ingest/spirometry.yaml
description: MeasurementObservationSet derivation of 'spirometry'
title: spirometry
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4176265
- OMOP:4241837
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
spirometry_post_bd:
name: spirometry_post_bd
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservationSet
source_study:
tag: source_study
value: LTRC, SPIROMICS
dataset_accession:
tag: dataset_accession
value: pht010064, pht013308
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: LTRC-ingest/spirometry_post_bd.yaml, SPIROMICS-ingest/spirometry_post_bd.yaml
description: MeasurementObservationSet derivation of 'spirometry_post_bd'
title: spirometry_post_bd
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4241837
- OMOP:4176265
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string
spirometry_pre_bd:
name: spirometry_pre_bd
annotations:
bdchm_class:
tag: bdchm_class
value: MeasurementObservationSet
source_study:
tag: source_study
value: LTRC, SPIROMICS
dataset_accession:
tag: dataset_accession
value: pht010064, pht013308
variable_accession:
tag: variable_accession
value: (derived via expr; see source_file)
source_file:
tag: source_file
value: LTRC-ingest/spirometry_pre_bd.yaml, SPIROMICS-ingest/spirometry_pre_bd.yaml
description: MeasurementObservationSet derivation of 'spirometry_pre_bd'
title: spirometry_pre_bd
from_schema: https://w3id.org/bdc/varlib
exact_mappings:
- OMOP:4241837
- OMOP:4176265
rank: 1000
owner: DiagnosticTestProcedure
domain_of:
- DiagnosticTestProcedure
range: string